treeflow.tree.rooted.numpy_rooted_tree module
- class treeflow.tree.rooted.numpy_rooted_tree.NumpyRootedTree(heights: ndarray | None = None, node_heights: ndarray | None = None, sampling_times: ndarray | None = None, topology: NumpyTreeTopology | None = None, parent_indices: ndarray | None = None, taxon_set: TaxonSet | None = None)
Bases:
NumpyRootedTreeAttrs- UnrootedTreeType
alias of
NumpyUnrootedTree
- property branch_lengths: ndarray
- property heights: ndarray
- get_unrooted_tree() TUnrootedTreeType
- node_heights: ndarray
- sampling_times: ndarray
- property taxon_count: TShapeType
- topology: NumpyTreeTopology