API documentation

• treeflow package
  • parse_newick()
  • convert_tree_to_tensor()
  • float_constant()
  • Alignment
    • Alignment.get_encoded_sequence_array()
    • Alignment.get_codon_partitioned_sequence_array()
    • Alignment.get_encoded_sequence_tensor()
    • Alignment.get_codon_partitioned_sequence_tensor()
    • Alignment.get_compressed_alignment()
    • Alignment.taxon_count
    • Alignment.pattern_count
  • WeightedAlignment
    • WeightedAlignment.get_codon_partitioned_sequence_array()
    • WeightedAlignment.get_codon_partitioned_sequence_tensor()
    • WeightedAlignment.get_compressed_alignment()
    • WeightedAlignment.get_encoded_sequence_array()
    • WeightedAlignment.get_encoded_sequence_tensor()
    • WeightedAlignment.get_weights_array()
    • WeightedAlignment.pattern_count
    • WeightedAlignment.taxon_count
    • WeightedAlignment.get_weights_tensor()
  • AlignmentType
    • AlignmentType.NUCLEOTIDE
    • AlignmentType.PROTEIN
  • AlignmentFormat
    • AlignmentFormat.FASTA
    • AlignmentFormat.NEXUS
    • AlignmentFormat.NEXML
    • AlignmentFormat.PHYLIP
  • PhyloModel
    • PhyloModel.check_model_dict()
    • PhyloModel.all_params()
    • PhyloModel.free_params()
    • PhyloModel.relaxed_clock()
  • phylo_model_to_joint_distribution()
  • write_tensor_trees()
  • Subpackages
    • treeflow.acceleration package
    • treeflow.bijectors package
    • treeflow.cli package
    • treeflow.debug package
    • treeflow.distributions package
    • treeflow.evolution package
    • treeflow.model package
    • treeflow.tf_util package
    • treeflow.traversal package
    • treeflow.tree package
    • treeflow.vi package