Python Module Index

t


	t
	`treeflow`
	`treeflow.acceleration`
	`treeflow.acceleration.bito`
	`treeflow.bijectors`
	`treeflow.bijectors.fixed_topology_bijector`
	`treeflow.bijectors.highway_flow`
	`treeflow.bijectors.highway_flow_node_bijector`
	`treeflow.bijectors.node_height_ratio_bijector`
	`treeflow.bijectors.preorder_node_bijector`
	`treeflow.bijectors.tree_ratio_bijector`
	`treeflow.cli`
	`treeflow.cli.benchmark`
	`treeflow.cli.inference_common`
	`treeflow.cli.ml`
	`treeflow.cli.vi`
	`treeflow.debug`
	`treeflow.debug.minimize_eager`
	`treeflow.debug.nonfinite_convergence_criterion`
	`treeflow.distributions`
	`treeflow.distributions.discrete`
	`treeflow.distributions.discrete_parameter_mixture`
	`treeflow.distributions.discretized`
	`treeflow.distributions.leaf_ctmc`
	`treeflow.distributions.markov_chain`
	`treeflow.distributions.markov_chain.linear_gaussian`
	`treeflow.distributions.markov_chain.postorder`
	`treeflow.distributions.sample_weighted`
	`treeflow.distributions.tree`
	`treeflow.distributions.tree.base_tree_distribution`
	`treeflow.distributions.tree.birthdeath`
	`treeflow.distributions.tree.birthdeath.birth_death_contemporary_sampling`
	`treeflow.distributions.tree.birthdeath.yule`
	`treeflow.distributions.tree.coalescent`
	`treeflow.distributions.tree.coalescent.constant_coalescent`
	`treeflow.distributions.tree.rooted_tree_distribution`
	`treeflow.evolution`
	`treeflow.evolution.calibration`
	`treeflow.evolution.calibration.calibration`
	`treeflow.evolution.calibration.mrca`
	`treeflow.evolution.seqio`
	`treeflow.evolution.substitution`
	`treeflow.evolution.substitution.base_substitution_model`
	`treeflow.evolution.substitution.eigendecomposition`
	`treeflow.evolution.substitution.nucleotide`
	`treeflow.evolution.substitution.nucleotide.alphabet`
	`treeflow.evolution.substitution.nucleotide.gtr`
	`treeflow.evolution.substitution.nucleotide.hky`
	`treeflow.evolution.substitution.nucleotide.jc`
	`treeflow.evolution.substitution.probabilities`
	`treeflow.evolution.substitution.util`
	`treeflow.model`
	`treeflow.model.approximation`
	`treeflow.model.approximation.cascading_flows`
	`treeflow.model.approximation.iaf`
	`treeflow.model.approximation.mean_field`
	`treeflow.model.event_shape_bijector`
	`treeflow.model.io`
	`treeflow.model.ml`
	`treeflow.model.phylo_model`
	`treeflow.model.structured_approximation`
	`treeflow.tf_util`
	`treeflow.tf_util.attrs`
	`treeflow.tf_util.dtype_util`
	`treeflow.tf_util.linear_operator_upper_triangular`
	`treeflow.tf_util.vectorize`
	`treeflow.traversal`
	`treeflow.traversal.anchor_heights`
	`treeflow.traversal.phylo_likelihood`
	`treeflow.traversal.postorder`
	`treeflow.traversal.preorder`
	`treeflow.traversal.ratio_transform`
	`treeflow.tree`
	`treeflow.tree.base_tree`
	`treeflow.tree.io`
	`treeflow.tree.rooted`
	`treeflow.tree.rooted.base_rooted_tree`
	`treeflow.tree.rooted.numpy_rooted_tree`
	`treeflow.tree.rooted.tensorflow_rooted_tree`
	`treeflow.tree.taxon_set`
	`treeflow.tree.topology`
	`treeflow.tree.topology.base_tree_topology`
	`treeflow.tree.topology.numpy_topology_operations`
	`treeflow.tree.topology.numpy_tree_topology`
	`treeflow.tree.topology.tensorflow_tree_topology`
	`treeflow.tree.unrooted`
	`treeflow.tree.unrooted.base_unrooted_tree`
	`treeflow.tree.unrooted.numpy_unrooted_tree`
	`treeflow.tree.unrooted.tensorflow_unrooted_tree`
	`treeflow.vi`
	`treeflow.vi.convergence_criteria`
	`treeflow.vi.convergence_criteria.nonfinite`
	`treeflow.vi.fixed_topology_advi`
	`treeflow.vi.marginal_likelihood`
	`treeflow.vi.optimizers`
	`treeflow.vi.optimizers.robust_optimizer`
	`treeflow.vi.progress_bar`
	`treeflow.vi.util`