treeflow.tree.rooted.base_rooted_tree module

class treeflow.tree.rooted.base_rooted_tree.BaseRootedTree(topology: BaseTreeTopology[TDataType], node_heights: TDataType, sampling_times: TDataType)

Bases: Generic[TDataType], AttrsLengthMixin

topology: BaseTreeTopology[TDataType]

node_heights: TDataType

sampling_times: TDataType

class treeflow.tree.rooted.base_rooted_tree.AbstractRootedTreeAttrs(tree_or_first_arg: AbstractRootedTreeAttrs | object | None = None, *args, **kwargs)

Bases: BaseRootedTree[TDataType], AbstractTree[TDataType, TShapeType], Generic[TDataType, TShapeType]

topology: AbstractTreeTopology[TDataType, TShapeType]

abstract property branch_lengths: TDataType

abstract get_unrooted_tree() → AbstractTree

node_heights: TDataType

sampling_times: TDataType

property taxon_count: TShapeType

property taxon_set: TaxonSet | None

class treeflow.tree.rooted.base_rooted_tree.AbstractRootedTree(tree_or_first_arg: AbstractRootedTreeAttrs | object | None = None, *args, **kwargs)

Bases: AbstractRootedTreeAttrs[TDataType, TShapeType], Generic[TDataType, TShapeType, TUnrootedTreeType]

UnrootedTreeType: alias of BaseUnrootedTree

abstract property heights: TDataType

get_unrooted_tree() → TUnrootedTreeType

abstract property branch_lengths: TDataType

node_heights: TDataType

sampling_times: TDataType

property taxon_count: TShapeType

property taxon_set: TaxonSet | None

topology: AbstractTreeTopology[TDataType, TShapeType]